File:Automated-Filtering-of-Intrinsic-Movement-Artifacts-during-Two-Photon-Intravital-Microscopy-pone.0053942.s011.ogv

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Automated-Filtering-of-Intrinsic-Movement-Artifacts-during-Two-Photon-Intravital-Microscopy-pone.0053942.s011.ogv ‎(Ogg Theora video file, length 19 s, 640 × 360 pixels, 1.78 Mbps)

Summary[edit]

Description
English: Filtering for movement artifacts in the mouse intestine using the Affine transformation option implemented into the Intravital_Microscopy_Toolbox. X-Y alignment of the image sequence taken from the myenteric plexus using the Affine transformation allows to get rid of the drift problems that occur in tissue prone to peristaltism. The white cross and circle are pointing to cells in the center and periphery of the field of view, respectively, that move in the x-y-direction in the original video (left panel) because of the intrinsic movement of the living intestine. Note that this movement is corrected after applying the Affine transformation (right panel).
Date
Source Video S5 from Soulet D, Paré A, Coste J, Lacroix S (2013). "Automated Filtering of Intrinsic Movement Artifacts during Two-Photon Intravital Microscopy". PLOS ONE. DOI:10.1371/journal.pone.0053942. PMID 23326545. PMC: 3543396.
Author Soulet D, Paré A, Coste J, Lacroix S
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Image title Filtering for movement artifacts in the mouse intestine using the Affine transformation option implemented into the Intravital_Microscopy_Toolbox. X-Y alignment of the image sequence taken from the myenteric plexus using the Affine transformation allows to get rid of the drift problems that occur in tissue prone to peristaltism. The white cross and circle are pointing to cells in the center and periphery of the field of view, respectively, that move in the x-y-direction in the original video (left panel) because of the intrinsic movement of the living intestine. Note that this movement is corrected after applying the Affine transformation (right panel).
Software used Xiph.Org libtheora 1.1 20090822 (Thusnelda)
Usage terms http://creativecommons.org/licenses/by/3.0/
Date and time of digitizing 2013
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